Index A | C | D | E | F | G | H | L | M | P | S A adj_normalize() (in module HoloNet.predicting) C ce_cell_type_network_plot() (in module HoloNet.plotting) ce_hotspot_plot() (in module HoloNet.plotting) cell_type_level_network() (in module HoloNet.plotting) cluster_lr_based_on_ce() (in module HoloNet.tools) compute_ce_network_degree_centrality() (in module HoloNet.tools) compute_ce_network_eigenvector_centrality() (in module HoloNet.tools) compute_ce_tensor() (in module HoloNet.tools) D default_w_visium() (in module HoloNet.tools) delta_e_proportion() (in module HoloNet.plotting) detect_pathway_related_genes() (in module HoloNet.plotting) E elements_expr_df_calculate() (in module HoloNet.tools) F fce_cell_type_network_plot() (in module HoloNet.plotting) feature_plot() (in module HoloNet.plotting) filter_ce_tensor() (in module HoloNet.tools) find_genes_linked_to_ce() (in module HoloNet.plotting) G get_continuous_cell_type_tensor() (in module HoloNet.predicting) get_expressed_lr_df() (in module HoloNet.preprocessing) get_gene_expr() (in module HoloNet.predicting) get_mgc_result() (in module HoloNet.predicting) get_mgc_result_for_multiple_targets() (in module HoloNet.predicting) get_one_case_expr() (in module HoloNet.predicting) get_one_hot_cell_type_tensor() (in module HoloNet.predicting) H HoloNet.plotting module HoloNet.predicting module HoloNet.preprocessing module HoloNet.tools module L load_brca_visium_10x() (in module HoloNet.preprocessing) load_lr_df() (in module HoloNet.preprocessing) load_model_list() (in module HoloNet.predicting) lr_cluster_ce_hotspot_plot() (in module HoloNet.plotting) lr_clustering_dendrogram() (in module HoloNet.plotting) lr_rank_in_mgc() (in module HoloNet.plotting) lr_umap() (in module HoloNet.plotting) M mgc_repeat_training() (in module HoloNet.predicting) mgc_training_for_multiple_targets() (in module HoloNet.predicting) module HoloNet.plotting HoloNet.predicting HoloNet.preprocessing HoloNet.tools P plot_cell_type_proportion() (in module HoloNet.plotting) plot_mgc_result() (in module HoloNet.plotting) S save_model_list() (in module HoloNet.predicting) select_w() (in module HoloNet.plotting)