HoloNet.plotting.lr_clustering_dendrogram

HoloNet.plotting.lr_clustering_dendrogram(model, lr_df, plot_lr_list=None, dflt_col='#000000', colors=None, fname=None)

Plot dendrogram plot for the hierarchical clustering model.

Parameters

model AgglomerativeClustering

Trained hierarchical clustering model.

lr_df DataFrame

A preprocessed LR-gene dataframe.

plot_lr_list List[str] | NoneOptional[List[str]] (default: None)

Lr pair on interest, which will be plot in dendrogram plot

dflt_col str (default: '#000000')

Color of root.

colors List[str] | NoneOptional[List[str]] (default: None)

Colors of each cluster.

fname str | Path | NoneUnion[str, Path, None] (default: None)

The output file name. If None, not save the figure.