HoloNet.plotting.lr_cluster_ce_hotspot_plot

HoloNet.plotting.lr_cluster_ce_hotspot_plot(lr_df, cell_cci_centrality, adata, cluster_col='cluster', fname=None, **kwargs)

Plot the general CE hotspot of each ligand-receptor group. Clustering results need to be provided in ‘cluster_col’ of lr_df.

Parameters

lr_df DataFrame

A preprocessed LR-gene dataframe, must contain the columns ‘LR_pair’ and clustering results.

cell_cci_centrality Tensor

A tensor (LR_num * cell_num) for the centrality of each cell according to each LR pair.

adata AnnData

Annotated data matrix.

cluster_col str (default: 'cluster')

The columns in lr_df dataframe storing the clustering results of each LR pair.

fname str | Path | NoneUnion[str, Path, None] (default: None)

The output file name. If None, not save the figure.

kwargs

Other paramters in ‘feature_plot’ function.