HoloNet.predicting.get_one_case_expr

HoloNet.predicting.get_one_case_expr(target_all_expr, cases_list, used_case_name)

Get a cell_num*1 tensor representing the scaled expression profile of one gene, using as the target of GNN.

Parameters

target_all_expr Tensor

Expression matrix of all target genes (from ‘get_gene_expr’ function).

cases_list List[str]

All target gene names (from ‘get_gene_expr’ function).

used_case_name str

The gene name for the output expression vector.

Return type

Tensor

Returns

: cell_num*1 tensor representing the scaled expression profile of one gene