HoloNet.plotting.find_genes_linked_to_ce#
- HoloNet.plotting.find_genes_linked_to_ce(predicted_expr_type_MGC_df, predicted_expr_only_type_df, used_gene_list, target_all_gene_expr, plot_gene_list=None, fname=None, display=True, **kwargs)#
Plot the correlation of MGC model results with ground truth, and the results of model only using cell-type with ground truth.
- Parameters
- predicted_expr_type_MGC_df
DataFrame A dataframe for the generated expression of multiple genes in each cell from MGC model using CE network and cell-type information, as the output of ‘get_mgc_result_for_multiple_targets’ function.
- predicted_expr_only_type_df
DataFrame A dataframe for the generated expression of multiple genes in each cell from model only using cell-type information, as the output of ‘get_mgc_result_for_multiple_targets’ function.
- used_gene_list
List[str] List of used target gene names
- target_all_gene_expr
Tensor The scaled expression tensor of target genes (cell_num * target_gene_num), from ‘get_gene_expr’ function.
- plot_gene_list
List[str] |NoneOptional[List[str]] (default:None) The genes will be pointed out in the output figure.
- fname
str|Path|NoneUnion[str,Path,None] (default:None) The output file name. If None, not save the figure.
- display default:
True If False, not plot the figure.
- kwargs
See in plt.scatter
- predicted_expr_type_MGC_df
- Return type
- Returns
: The correlation of MGC model results with ground truth, and the results of model only using cell-type with ground truth.